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Citing St. Jude Cloud

We are currently in progress of preparing the St. Jude Cloud manuscript. Until further notice, please ensure that when St. Jude Cloud or data accessed therein is used in your work, please:

  1. Cite the relevant paper for each of the datasets and/or resources that you used in your study.

  2. State in the Results and/or Methods section that the relevant data and/or resource was obtained from St. Jude Cloud. Example statement:

    "Whole genome sequencing data for relapse tumor samples from 345 pediatric patients were obtained from St. Jude Cloud."

  3. State in the Data availability section of the manuscript that data and/or resource can be accessed via St. Jude Cloud. Example statement:

    "Whole genome sequencing data for pediatric relapse tumor samples used for analysis in this study were obtained from St. Jude Cloud (https://www.stjude.cloud) – a publicly accessible pediatric genomic data resource requiring approval for controlled data access."

Dataset Reference Table

Please download the Schedule 1(s) (linked in table below) to find dataset specific wording of acknowledgement(s).

St. Jude Cloud Dataset Reference
Pediatric Cancer Genome Project (PCGP) dataset PCGP perspectives paper and the relevant tumor type paper(s); file_download PCGP Schedule 1
St. Jude Lifetime (SJLIFE) dataset SJLIFE paper; file_download SJLIFE Schedule 1
Clinical Genomics (Clinical Pilot, Genomes for Kids, Real-Time Clinical Genomics) dataset Clinical Pilot paper; file_download Clinical Genomics Schedule 1
Sickle Cell Genome Project (SGP) dataset paper in progress; file_download SGP Schedule 1
Childhood Cancer Survivor Study (CCSS) dataset CCSS study design paper; file_download CCSS Schedule 1

Note

If you are unsure what dataset(s) the data that you have been vended belongs to, you can find this information in the sj_datasets column of the SAMPLE_INFO.txt file.

Warning

Publishing using any of the data files before the embargo date has passed is strictly prohibited as outlined in the Data Access Agreement (DAA).

Resource Reference Table

St. Jude Cloud Resource Reference
ProteinPaint ProteinPaint paper
GenomePaint paper in progress
PeCan Pie PeCan Pie paper
NeoepitopePred NeoepitopePred paper
ChIP-Seq Peak Calling unpublished
Rapid RNA-Seq Fusion Detection paper in progress
WARDEN unpublished
Mutational Signatures Mutational Patterns paper
cis-x paper in progress
XenoCP paper in progress

Contact Us

Any questions, comments, or concerns can be directed to our "Contact Us" form or you can email us directly at support@stjude.cloud.