SV and fusion transcript

Tabular data format for SV and fusion events

First line must be the header line, with following columns.

  • gene_a

    • gene on 5' end of a fusion. Do not apply value for intergenic break-end.
  • isoform_a

    • The RefSeq/Ensembl accession of gene_a. Leave blank for intergenic break-end.
  • chr_a

    • Chromosome name of gene_a. In case of intergenic translocation, use the 5' end of the break point. Use name "chr10" but not "10".
  • position_a

    • Chromosomal position of the 5' end break point, 0-based.
  • strand_a

      • or -
  • gene_b

    • Gene on 3' end of a fusion. In case of intergenic translocation, leave unspecified.
  • isoform_b

    • The RefSeq/Ensembl accession of gene_b. Leave blank for intergenic break-end.
  • chr_b

    • Chromosome name of gene_b. In case of intergenic translocation, use the 3' end of the break point.
  • position_b

    • Chromosomal position of the 3' end break point, 0-based.
  • strand_b

      • or -

Optional columns:

  • Patient

  • Sample

  • Sampletype

Order of column doesn't matter.

Lines starting with "#" will be ignored.