Internal tandem duplications

ITD: internal tandem duplication

First line must be the header line, with following columns. Order of columns does not matter.

  • gene

    • Gene symbol.
  • isoform

    • RefSeq/Ensembl accession of the isoform.
  • rnaPosition

    • optional

    • RNA nucleotide position of the 5' end of the duplicated region on the gene transcript, relative to transcription start site. 1-based.

  • rnaDuplength

    • RNA nucleotide length of the duplicated region, required if rnaPosition is used.
  • chr

    • Chromosome name, optional
  • chr_start

    • Start genomic position, required if "chr" is used.
  • Chr_stop

    • Stop genomic position, required if "chr" is used.

Other optional columns:

  • Patient

  • Sample

  • Sampletype

  • disease

Data lines starting with "#" will be ignored.